Skip to main content Skip to secondary navigation

James K. Chen

Executive Committee
Jauch Professor and Professor of Chemical and Systems Biology, of Developmental Biology and of Chemistry
James Chen received his A.B. and Ph.D. degrees in Chemistry and Chemical Biology from Harvard, and he completed his postdoctoral studies at the Department of Molecular Biology and Genetics at Johns Hopkins. He joined the Stanford faculty in 2003, and his research interests span organic chemistry, chemical biology, developmental biology, and cancer biology.

The Chen lab investigates the molecular mechanisms that underlie tissue formation and tumorigenesis, guided by chemical principles and enabled by chemical technologies. For example, the Chen group has developed small-molecule inhibitors of Hedgehog signaling, a biochemical pathway that is required for multiple aspects of embryonic development and contributes to human cancer. They discovered the first specific inhibitors of cytoplasmic dyneins, microtubule motors that regulate a signaling organelle called the primary cilium, and first-in-classes inhibitors of aldehyde dehydrogenase 1B1, a mitochondrial that promotes colorectal and pancreatic cancer. In addition, members of the lab have synthesized photoactivatable antisense oligonucleotides that allow gene expression to be suppressed with spatiotemporal precision. By applying these tools in zebrafish embryos, they have elucidated the transcriptional programs that regulate formation of the notochord, somites, and other mesodermal tissues. The Chen group also collaborated with the Harbury lab to devise new methods for time-resolved lanthanide microscopy. This approach takes advantage of the long-lived photoluminescence of lanthanide chelates, and it enables ultrasensitive, autofluorescence-free imaging of whole organisms.

Current research interests in the lab include small-molecule modulators of cancer stem cell metabolism, optogenetic tools for controlling cell signaling, the biochemical and cellular processes that drive spermiogenesis, and the development of non-hormonal male contraceptives.


A.B., Harvard College, Chemistry (1991)
Ph.D., Harvard University, Chemistry and Chemical Biology (1998)
Postdoctoral Fellow, Johns Hopkins School of Medicine, Molecular Biology and Genetics (2003)


(650) 725-3582
Mail Code